Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015826758.1_cds_XP_016502803.1_16404
CDS Infomation

[gene=LOC107820951] [db_xref=GeneID:107820951] [protein=presequence protease 1, chloroplastic/mitochondrial-like] [protein_id=XP_016502803.1] [location=join(10938..11190,11283..11466,11740..11914,11995..12127,12326..12396,13054..13137,15321..15411,16596..17116,17222..17386,17470..17688,17775..17902,19773..19962,21210..21293,21385..21482,21768..22032,22128..22290,22377..22557,23114..23185,23686..23827)] [gbkey=CDS]
Sequence

ATGGAGAAGGCGGTTTTACTACGCTCTCTGTCATCCACTTCCACGCTCGCCTTCTCTAGA
ATATTCTCACGCTCTTCACACCGACTCGCTTCTTACTCTGCTAAACGACATCGCTTACTC
CAGAACCTTTACCGCCGGCGTTCACTTATCCGGAGCAACGGTCGTCTCCTATCGCCTTCG
CTTGACTTGAAAAGACAGTTTTACCCTCTCTCAGTTCGAGCCATCGCCACTTCCGCCCCT
CAATCCTCTCAAGAGTTTCTTGGTGCTGATGATGAAGTTGCTGAGAAATATGGGTTCGAG
AAAGTATCCGAGCAGTTTATTGATGAGTGTAAATCTAAAGCTGTTTTGTACAAACACAAG
AAAACCGGCGCTGAAATAATGTCGGTGTCCAATGACGATGAGAATAAAGTCTTTGGCATT
GTCTTCCGGACTCCTCCGAAAGATTCTACTGGTATTCCTCATATACTGGAACATAGTGTA
CTTTGTGGTTCAAGGAAGTATCCGTTGAAAGAGCCCTTTGTTGAACTGTTGAAGGGAAGC
TTGAATACTTTTTTGAATGCTTTCACATATCCAGATAGGACATGTTATCCTGTGGCGTCC
ACTAATGCAAAGGATTTCTACAACCTGGTTGACGTATACTTAGATGCTGTCTTTTTCCCT
AAATGTGTGGAGGATTTCCAAACATTTCAACAAGAGGGTTGGCATTATGAACTGAATGAC
CCCTCAGATGACATAACTTTTAAAGGGGTTGTGTTCAATGAGATGAAGGGAGTTTATTCT
CAGCCTGATAATCTACTAGGCCGAACTTCCCAGCAGGCACTTTTTCCTGATAATACCTAT
GGTGTTGACAGTGGCGGTGACCCACGAGTAATTCCTAGCCTTTCTTTTGAGGAATTTAAG
GATTTCCATAGGAAATTTTACCATCCCAGCAATTCAAGGATATGGTTTTATGGAGATGAT
GACCCAAATGAACGTCTGCGGATCTTAAGTGAGTATTTGAACATGTTTGATGCCAGTTCA
GCTCCTCATGAATCAAGAGTTGAACCACAGAAACTATTTTCTGAGCCGGTCAGGATCGTA
GAAAAATATCCTGTTGGAGAAGATGGGGACCTGAAAAAGAAGCACATGGTATGCCTTAAT
TGGCTTCTATCTGACAAGCCACTGGATTTGGAAACTGAGCTTGCCCTAGGTTTTTTGGAT
CATCTGCTTTTGGGGACTCCAGCTTCTCCCTTGAGGAAGATCTTGCTAGAAAGTGGTCTA
GGAGATGCTATTGTTGGTGGAGGGATTGAGGATGAGCTCCTTCAGCCTCAGTTTAGCATT
GGGTTGAAGGGTGTTGCTGAAGAGAACATTCAGAAGATTGAAGAATTGGTCATGAGTACT
CTAGAAGGCTTAGCTGAGAAAGGTTTTGATTCAGATGCTGTTGAGGCATCAATGAATACA
ATTGAGTTTTCTCTTAGAGAAAATAACACTGGCTCATTCCCTCGTGGTTTAGCGTTGATG
CTCCGCTCTATTGGTAAATGGATTTATGACATGGATCCATTTGAACCACTTAAGTATCAG
AAACCCCTTGAGGCCCTGAAAGCCAGAATAGCTAAGGAAGGCTCCAAAGCTGTTTTTGCT
CCTTTGATAGACCAATACATCTTGAGAAATCCACACCGTGTAACGGTTGAGATGCAGCCT
GACCCAAAGAAGGCTTCTCGTGAGGAAGAAATAGAAAAAGAAACGTTGGATAAAGTTAAA
GCAAGCATGACCCAAGAGGATCTTGCTGAGCTGGCTCGGGCAACACACGAGCTACGGTTA
AAGCAAGAAACTCCTGACCCGCCAGAAGCCCTAAAGAGTGTGCCCAGCCTCTCTCTACAA
GATATTCCTCGAGAACCTACACATGTTCCAACAGAGGTAGGAGACATCAACGGGGTAAAA
ATTTTGAGGCATGACCTCTTCACGAACGATGTTCTTTATGCTGAAGTTGTCTTCAACATG
AGCTCATTGAAGCAAGAGCTGCTACCGTTGGTCCCACTTTTCTGTCAGTCTCTGCTGGAA
ATGGGCACAAAGGACTTAGACTTTGTGCAGTTGAACCAGTTGATTGGAAGGAAAACTGGA
GGGATATCAGTCTATCCTTTCACCTCATCGGTGCGCGGCAAAGTGGAGCCATGTAGCAAG
ATAATTGTTCGAGGCAAAGCCATGTCACAACGTACAGATGATCTATTTAACTTGATCAAC
CGCGTTCTTCAAGATGTCCAACTTAATGACCATAAGCGTTTCAAGCAGTTTGTGTCTCAA
AGCAGGGCCAGAATGGAGAATCGACTAAGAGGCAGTGGTCATAGCATTGCTGCTTCAAGG
ATGGGTGCAAAGCTCAACGTTGCCGGTTGGATATCTGAACAAATGGGTGGTGTAAGCTAC
TTGGAATTTCTTAAGGGCCTTGAAGACCAAATTGAGAAGGACTGGCCCCAAATATCTTCA
TCCCTCGAGGAGATCCGAACATCCTTGCTTTCCAAGAATGGGTGTCTGATAAATTTGACA
GCTGATGGGAAGAATCTCACCAACGCGGAGAAACATATTAGCAATTTTCTTGATTTGCTT
CCTAGCACATCCTTAGTGGAGCCAGCTGCTTGGAATGCACAACTGTCTCGCTCAAATGAA
GCTATTGTTGTTCCTACTCAGGTGAATTATGTTGGAAAAGCAGCAAATCTATATGAAGCT
GGTTATGAGCTTAAAGGCAGTGCTTATGTTATTTCTAATTATATTAGTAATACATGGCTG
TGGGATCGTGTACGTGTTAGTGGTGGAGCTTATGGAGGATTTTGTGGTTTTGACACCCAT
TCAGGGGTATTCTCATTCTTATCATACCGAGACCCAAATTTATTGAAGACACTTGATGTG
TATGATGGAACGAGTAATTTCCTAAAAGAACTTGAAATGGATGATGACGCTCTCACAAAG
GCAATTATTGGGACTATTGGAGATGTAGATGCTTACCAATTGCCCGATGCCAAAGGATAC
AGTAGTTTATTACGATATTTACTGGGAGTATCAGAAGAAGAAAGGCAAAGGAGACGTGAA
GAGATATTATCAACAAGGCTGGATGATTTCAAGAAATTTGGAGACGTCATGGAGGCAGTT
AAAGATAAAGGGGTGGTTGTCGCTGTAGCATCACCGGATGATGTTGAGGCTGCCAACAAG
GAGCGTTCCAACTTCTTGCAAGTCAAGAAAGCACTGTAA

Peptide Sequence

PEP ID

XP_016502803.1
PEP Infomation

PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MEKAVLLRSLSSTSTLAFSRIFSRSSHRLASYSAKRHRLLQNLYRRRSLIRSNGRLLSPS
LDLKRQFYPLSVRAIATSAPQSSQEFLGADDEVAEKYGFEKVSEQFIDECKSKAVLYKHK
KTGAEIMSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGS
LNTFLNAFTYPDRTCYPVASTNAKDFYNLVDVYLDAVFFPKCVEDFQTFQQEGWHYELND
PSDDITFKGVVFNEMKGVYSQPDNLLGRTSQQALFPDNTYGVDSGGDPRVIPSLSFEEFK
DFHRKFYHPSNSRIWFYGDDDPNERLRILSEYLNMFDASSAPHESRVEPQKLFSEPVRIV
EKYPVGEDGDLKKKHMVCLNWLLSDKPLDLETELALGFLDHLLLGTPASPLRKILLESGL
GDAIVGGGIEDELLQPQFSIGLKGVAEENIQKIEELVMSTLEGLAEKGFDSDAVEASMNT
IEFSLRENNTGSFPRGLALMLRSIGKWIYDMDPFEPLKYQKPLEALKARIAKEGSKAVFA
PLIDQYILRNPHRVTVEMQPDPKKASREEEIEKETLDKVKASMTQEDLAELARATHELRL
KQETPDPPEALKSVPSLSLQDIPREPTHVPTEVGDINGVKILRHDLFTNDVLYAEVVFNM
SSLKQELLPLVPLFCQSLLEMGTKDLDFVQLNQLIGRKTGGISVYPFTSSVRGKVEPCSK
IIVRGKAMSQRTDDLFNLINRVLQDVQLNDHKRFKQFVSQSRARMENRLRGSGHSIAASR
MGAKLNVAGWISEQMGGVSYLEFLKGLEDQIEKDWPQISSSLEEIRTSLLSKNGCLINLT
ADGKNLTNAEKHISNFLDLLPSTSLVEPAAWNAQLSRSNEAIVVPTQVNYVGKAANLYEA
GYELKGSAYVISNYISNTWLWDRVRVSGGAYGGFCGFDTHSGVFSFLSYRDPNLLKTLDV
YDGTSNFLKELEMDDDALTKAIIGTIGDVDAYQLPDAKGYSSLLRYLLGVSEEERQRRRE
EILSTRLDDFKKFGDVMEAVKDKGVVVAVASPDDVEAANKERSNFLQVKKAL

Transcript Sequence

Gene sequence data has not been registered.